Basic Information
Locus ID:
TC04G2310
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
Protein DA1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 95773158 | 95783806 | - | TC04G2310 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.87 | 56,627.58 Da | 62.39 | 71.79 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09396 | LIM_DA1 | 144 | 196 | 1.19829E-27 | - |
| Pfam | PF00412 | LIM domain | 144 | 198 | 1.2E-7 | IPR001781 |
| Pfam | PF12315 | Protein DA1 | 293 | 490 | 1.2E-89 | IPR022087 |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 138 | 169 | 2.98E-7 | - |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 170 | 225 | 1.66E-8 | - |
| SUPERFAMILY | SSF48695 | Multiheme cytochromes | 144 | 278 | 2.51E-5 | IPR036280 |
| Gene3D | G3DSA:2.10.110.10 | Cysteine Rich Protein | 138 | 201 | 1.3E-13 | - |
| SMART | SM00726 | uim | 77 | 96 | 0.07 | IPR003903 |
| SMART | SM00132 | lim_4 | 143 | 195 | 7.7E-10 | IPR001781 |
| SMART | SM00726 | uim | 43 | 62 | 0.051 | IPR003903 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 43 | 62 | 9.448441 | IPR003903 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 77 | 96 | 9.255892 | IPR003903 |
| ProSiteProfiles | PS50023 | LIM domain profile. | 142 | 202 | 11.5534 | IPR001781 |
| ProSitePatterns | PS00478 | LIM zinc-binding domain signature. | 144 | 178 | - | IPR001781 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 11 | 37 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 12 | 27 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19270.1 | DA1. | 0 |
| RefSeq | XP_010254980.1 | PREDICTED: protein DA1-related 1-like [Nelumbo nucifera] | 0 |
| P0C7Q8 | Protein DA1 OS=Arabidopsis thaliana OX=3702 GN=DA1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C8ZA37 | LIM zinc-binding domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology