Basic Information
Locus ID:
TC04G2093
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Short Name:
LYK4
Description:
lysM domain receptor-like kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 89322474 | 89325839 | + | TC04G2093 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.40 | 48,383.64 Da | 41.42 | 97.70 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00118 | LysM | 8 | 52 | 0.00561246 | IPR018392 |
| Pfam | PF01476 | LysM domain | 9 | 53 | 1.7E-4 | IPR018392 |
| Pfam | PF00069 | Protein kinase domain | 176 | 430 | 2.4E-37 | IPR000719 |
| SUPERFAMILY | SSF54106 | LysM domain | 7 | 53 | 8.24E-5 | IPR036779 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 149 | 432 | 1.01E-63 | IPR011009 |
| Gene3D | G3DSA:3.10.350.10 | LysM domain | 7 | 66 | 9.3E-8 | IPR036779 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 137 | 231 | 1.1E-17 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 232 | 434 | 5.5E-52 | - |
| ProSiteProfiles | PS51782 | LysM domain profile. | 7 | 52 | 10.596818 | IPR018392 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 92 | 435 | 31.933666 | IPR000719 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G23770.1 | protein kinase family protein / peptidoglycan-binding LysM domain-containing protein. | 0 |
| RefSeq | XP_034889870.1 | lysM domain receptor-like kinase 4 [Populus alba] | 0 |
| O64825 | LysM domain receptor-like kinase 4 OS=Arabidopsis thaliana OX=3702 GN=LYK4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6M2ECU7 | LysM domain receptor-like kinase 4 OS=Populus davidiana OX=266767 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology