Basic Information
Locus ID:
TC04G1989
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
Rhamnogalacturonate lyase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 85868877 | 85881315 | + | TC04G1989 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.06 | 78,583.00 Da | 36.37 | 75.55 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10317 | RGL4_C | 491 | 678 | 6.50177E-54 | - |
| CDD | cd10316 | RGL4_M | 380 | 479 | 3.536E-30 | IPR029413 |
| CDD | cd10320 | RGL4_N | 54 | 346 | 2.29775E-75 | - |
| Pfam | PF06045 | Rhamnogalacturonate lyase family | 48 | 249 | 9.5E-80 | IPR010325 |
| Pfam | PF14683 | Polysaccharide lyase family 4, domain III | 489 | 677 | 2.8E-52 | IPR029411 |
| Pfam | PF14686 | Polysaccharide lyase family 4, domain II | 405 | 475 | 7.6E-22 | IPR029413 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 57 | 342 | 3.77E-9 | IPR011013 |
| SUPERFAMILY | SSF49452 | Starch-binding domain-like | 380 | 477 | 5.69E-7 | IPR013784 |
| SUPERFAMILY | SSF49785 | Galactose-binding domain-like | 486 | 678 | 2.21E-49 | IPR008979 |
| Gene3D | G3DSA:2.60.120.260 | - | 487 | 678 | 2.7E-16 | - |
| Gene3D | G3DSA:2.70.98.10 | - | 51 | 352 | 2.2E-14 | IPR014718 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G22620.1 | Rhamnogalacturonate lyase family protein. | 0 |
| RefSeq | XP_021853123.1 | probable rhamnogalacturonate lyase B isoform X2 [Spinacia oleracea] | 0 |
| TrEMBL | A0A803MBF5 | rhamnogalacturonan endolyase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology