Basic Information
Locus ID:
TC04G1302
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
CHY zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 59048491 | 59079857 | + | TC04G1302 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.74 | 140,804.88 Da | 51.99 | 74.35 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16464 | RING-H2_Pirh2 | 1128 | 1171 | 2.0553E-16 | - |
| CDD | cd12108 | Hr-like | 661 | 817 | 1.82319E-27 | - |
| CDD | cd12108 | Hr-like | 317 | 445 | 1.26724E-14 | - |
| CDD | cd12108 | Hr-like | 56 | 183 | 1.57352E-31 | - |
| Pfam | PF05495 | CHY zinc finger | 1000 | 1075 | 2.2E-18 | IPR008913 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 657 | 818 | 1.1E-7 | IPR012312 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 58 | 185 | 1.8E-12 | IPR012312 |
| Pfam | PF14599 | Zinc-ribbon | 1176 | 1233 | 1.0E-23 | IPR039512 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 315 | 447 | 1.4E-7 | IPR012312 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1127 | 1174 | 1.32E-7 | - |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 1066 | 1121 | 3.4E-15 | IPR037275 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 995 | 1056 | 2.09E-16 | IPR037274 |
| Gene3D | G3DSA:2.20.28.10 | - | 1200 | 1241 | 2.5E-16 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 313 | 463 | 9.1E-20 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 653 | 886 | 1.3E-26 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 52 | 203 | 2.4E-33 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1125 | 1173 | 1.7E-8 | IPR013083 |
| SMART | SM00184 | ring_2 | 1129 | 1170 | 1.5E-5 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 1065 | 1128 | 28.744457 | IPR017921 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1129 | 1171 | 11.146755 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 993 | 1062 | 25.510483 | IPR008913 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G18290.1 | zinc finger protein-related. Encodes BRUTUS (BTS), a putative E3 ligase protein with metal ion binding and DNA binding domains, which negatively regulates the response to iron deficiency. | 0 |
| RefSeq | XP_010681649.2 | zinc finger protein BRUTUS isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q8LPQ5 | Zinc finger protein BRUTUS OS=Arabidopsis thaliana OX=3702 GN=BTS PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C8YHY9 | Zinc finger protein BRUTUS OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology