Basic Information
Locus ID:
TC04G1282
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
SEC12-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 57305111 | 57332097 | - | TC04G1282 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.54 | 41,861.31 Da | 36.01 | 86.77 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 144 | 166 | 0.2 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 312 | 341 | 0.0042 | IPR001680 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 42 | 342 | 2.51E-33 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 14 | 349 | 1.5E-61 | IPR015943 |
| SMART | SM00320 | WD40_4 | 129 | 167 | 1.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 174 | 209 | 0.38 | IPR001680 |
| SMART | SM00320 | WD40_4 | 261 | 300 | 9.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 303 | 343 | 0.077 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 187 | 218 | 8.837541 | IPR001680 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G01470.1 | SEC12P-like 2 protein. Sec12p-like protein (GTP exchange protein) that functionally complements yeast sec12 null mutant. Protein is localized to the ER. | 0 |
| RefSeq | XP_010691946.1 | SEC12-like protein 2 [Beta vulgaris subsp. vulgaris] | 0 |
| Q39221 | SEC12-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=STL2P PE=1 SV=4 | 0 | |
| TrEMBL | A0A5B6ZCT2 | Putative SEC12-like protein 2 OS=Davidia involucrata OX=16924 GN=Din_011186 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology