Basic Information
Locus ID:
TC04G1178
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
Proteinaceous RNase P 1, chloroplastic
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 51598920 | 51629083 | - | TC04G1178 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.95 | 67,642.55 Da | 42.83 | 83.21 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18671 | PIN_PRORP-Zc3h12a-like | 421 | 543 | 1.40638E-61 | - |
| Pfam | PF17177 | Pentacotripeptide-repeat region of PRORP | 92 | 321 | 9.5E-74 | IPR033443 |
| Pfam | PF16953 | Protein-only RNase P | 363 | 589 | 1.6E-70 | IPR031595 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 100 | 592 | 5.0E-230 | IPR011990 |
| Gene3D | G3DSA:3.40.50.11980 | - | 381 | 555 | 5.0E-230 | - |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 200 | 234 | 8.988323 | IPR002885 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32230.1 | proteinaceous RNase P 1. RNase P able to cleave tRNA-like structures involved in the maturation of plant mitochondrial mRNAs. | 0 |
| RefSeq | XP_052194532.1 | proteinaceous RNase P 1, chloroplastic/mitochondrial [Diospyros lotus] | 0 |
| Q66GI4 | Proteinaceous RNase P 1, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PRORP1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J5BSF3 | ribonuclease P OS=Nyssa sinensis OX=561372 GN=F0562_020350 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology