Basic Information
Locus ID:
TC04G1150
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
F-Box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 50236459 | 50247145 | + | TC04G1150 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.54 | 40,072.35 Da | 39.01 | 66.56 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08238 | Sel1 repeat | 134 | 159 | 31.0 | IPR006597 |
| Pfam | PF00646 | F-box domain | 84 | 115 | 2.8E-5 | IPR001810 |
| Pfam | PF08238 | Sel1 repeat | 177 | 192 | 14.0 | IPR006597 |
| Pfam | PF08238 | Sel1 repeat | 194 | 226 | 7.0 | IPR006597 |
| Pfam | PF08238 | Sel1 repeat | 264 | 298 | 4.2E-6 | IPR006597 |
| Pfam | PF08238 | Sel1 repeat | 228 | 261 | 1.8E-6 | IPR006597 |
| SUPERFAMILY | SSF81383 | F-box domain | 77 | 116 | 9.94E-8 | IPR036047 |
| SUPERFAMILY | SSF81901 | HCP-like | 143 | 333 | 4.77E-34 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 80 | 120 | 8.0E-7 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 122 | 206 | 4.7E-11 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 207 | 362 | 2.8E-37 | IPR011990 |
| SMART | SM00671 | sel1 | 161 | 192 | 40.0 | IPR006597 |
| SMART | SM00671 | sel1 | 299 | 330 | 190.0 | IPR006597 |
| SMART | SM00671 | sel1 | 193 | 226 | 1.5 | IPR006597 |
| SMART | SM00671 | sel1 | 263 | 298 | 1.1E-6 | IPR006597 |
| SMART | SM00671 | sel1 | 227 | 262 | 1.1E-5 | IPR006597 |
| SMART | SM00671 | sel1 | 124 | 160 | 0.23 | IPR006597 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 40 | 66 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 22 | 66 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G70590.1 | F-box family protein. | 0 |
| RefSeq | XP_021654864.1 | F-box protein At1g70590-like isoform X1 [Hevea brasiliensis] | 0 |
| Q94C27 | F-box protein At1g70590 OS=Arabidopsis thaliana OX=3702 GN=At1g70590 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7J7GY20 | F-box domain-containing protein OS=Camellia sinensis OX=4442 GN=HYC85_015383 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg5520, jg9495 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_3605 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah013639 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g148140 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg42856, Sbi_jg45474 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg11331 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00002477 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl35260, Sgl35273, Sgl40639 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000003499, gene:ENSEOMG00000012582 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0004700, CQ.Regalona.r1.6BG0004910 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30221740, pistato.v30295790 |
| Apiaceae | Apium graveolens | 1 | Ag5G02234 |
| Arecaceae | Cocos nucifera | 1 | scaffold000161G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103698089 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_02.1424.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri9G20745 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G70590.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10018848m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g25750.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB03g048380.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G1363 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G1445 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno08g03290 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g15720 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.603 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00022328, Pov_00034269 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb0G37097, Lb4G24102 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.4062, BH09.1461, CH09.1572 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0313670, gene-QOZ80_4BG0344810 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0175210.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_044624, gene-QYE76_046834 |
| Poaceae | Oryza coarctata | 1 | Oco07G008490 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g40030.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G133100 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0302317, Pt_Chr0302369 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr10G008820, Chr23G010670 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G585300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG048910, gene_TRIDC2BG051510 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G327700.1, TraesCS2B02G354300.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb344380_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-36875 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g19909 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG13.165 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g08120 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_15_RagTag.776 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-26965 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-12460 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-15619 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000001l.421 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00002695 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-11239 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-17736 |
| Salicaceae | Populus euphratica | 3 | populus_peu07719, populus_peu21774, populus_peu21781 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132625516, gene-LOC132641128 |
| Solanaceae | Solanum chilense | 1 | SOLCI000158400 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107008915, gene-LOC107019035 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.22550_chr10_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G1150 |
| Zosteraceae | Zostera marina | 1 | Zosma02g03160.v3.1 |