Basic Information
Locus ID:
TC04G0679
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
f-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 23873819 | 23875749 | + | TC04G0679 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.86 | 55,333.34 Da | 48.32 | 73.07 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01753 | MYND finger | 421 | 460 | 8.1E-7 | IPR002893 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 415 | 467 | 1.62E-9 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 144 | 205 | 3.27E-5 | IPR036047 |
| SUPERFAMILY | SSF81901 | HCP-like | 215 | 331 | 4.19E-11 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 199 | 370 | 2.0E-16 | IPR011990 |
| Gene3D | G3DSA:6.10.140.2220 | - | 407 | 465 | 1.2E-9 | - |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 418 | 460 | 10.764384 | IPR002893 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 477 | 505 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 471 | 505 | - | - |
| Coils | Coil | Coil | 483 | 503 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G67340.1 | HCP-like superfamily protein with MYND-type zinc finger. | 0 |
| RefSeq | XP_030498261.1 | F-box protein At1g67340 [Cannabis sativa] | 0 |
| Q9FYF9 | F-box protein At1g67340 OS=Arabidopsis thaliana OX=3702 GN=At1g67340 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1R3GQV0 | Zinc finger, MYND-type OS=Corchorus capsularis OX=210143 GN=CCACVL1_24106 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology