Basic Information
Locus ID:
TC04G0105
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
f-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 3273719 | 3311869 | - | TC04G0105 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.25 | 34,133.07 Da | 51.77 | 91.95 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 6 | 43 | 3.8E-7 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 6 | 52 | 9.29E-9 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 3 | 43 | 1.5E-6 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 49 | 151 | 1.3E-8 | IPR032675 |
| SMART | SM00367 | LRR_CC_2 | 69 | 94 | 0.059 | IPR006553 |
| SMART | SM00256 | fbox_2 | 5 | 45 | 0.0029 | IPR001810 |
| SMART | SM00367 | LRR_CC_2 | 95 | 120 | 270.0 | IPR006553 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 1 | 46 | 9.841896 | IPR001810 |
| ProSitePatterns | PS00198 | 4Fe-4S ferredoxin-type iron-sulfur binding region signature. | 223 | 234 | - | IPR017900 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G01620.1 | RNI-like superfamily protein. | 0 |
| RefSeq | XP_008221444.1 | PREDICTED: F-box protein SKIP28 [Prunus mume] | 0 |
| Q9ZU90 | F-box protein SKIP28 OS=Arabidopsis thaliana OX=3702 GN=SKIP28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5N5GY46 | F-box protein SKIP28-like OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_037017 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology