Basic Information
Locus ID:
TC04G0097
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
Zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 2961357 | 2964659 | + | TC04G0097 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.66 | 61,385.39 Da | 45.59 | 71.42 | -0.70 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 362 | 388 | 4.0E-8 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 327 | 351 | 2.8E-7 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 283 | 306 | 2.0E-6 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 277 | 308 | 2.67E-6 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 358 | 390 | 1.23E-5 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 321 | 353 | 1.81E-6 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 276 | 309 | 7.1E-13 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 357 | 390 | 1.4E-10 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 318 | 356 | 2.2E-12 | - |
| SMART | SM00547 | zf_4 | 285 | 309 | 4.1E-7 | IPR001876 |
| SMART | SM00547 | zf_4 | 362 | 386 | 9.5E-6 | IPR001876 |
| SMART | SM00547 | zf_4 | 329 | 353 | 1.1E-6 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 283 | 312 | 9.529128 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 327 | 356 | 9.551712 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 360 | 389 | 9.709803 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 364 | 383 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 287 | 306 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 61 | 78 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 58 | 78 | - | - |
| Coils | Coil | Coil | 240 | 260 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G70650.1 | Ran BP2/NZF zinc finger-like superfamily protein. | 0 |
| RefSeq | XP_023910999.1 | uncharacterized protein LOC112022607 [Quercus suber] | 0 |
| TrEMBL | A0A5N6REN9 | Zinc finger protein VAR3, chloroplastic OS=Carpinus fangiana OX=176857 GN=FH972_015014 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology