Basic Information
Locus ID:
TC03G3010
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Short Name:
UBP16
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 118009817 | 118016097 | + | TC03G3010 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.76 | 123,387.49 Da | 58.07 | 68.83 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02661 | Peptidase_C19E | 582 | 885 | 1.59653E-132 | - |
| Pfam | PF01753 | MYND finger | 98 | 135 | 3.1E-10 | IPR002893 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 581 | 884 | 2.1E-44 | IPR001394 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 95 | 137 | 2.09E-11 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 580 | 886 | 2.16E-84 | IPR038765 |
| Gene3D | G3DSA:6.10.140.2220 | - | 82 | 139 | 6.1E-13 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 574 | 897 | 1.1E-90 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 581 | 887 | 50.574821 | IPR028889 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 98 | 135 | 12.052056 | IPR002893 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 582 | 597 | - | IPR018200 |
| ProSitePatterns | PS01360 | Zinc finger MYND-type signature. | 98 | 135 | - | IPR002893 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 160 | 184 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 414 | 437 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 390 | 495 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1021 | 1043 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 909 | 932 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 960 | 986 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 452 | 492 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 390 | 409 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 960 | 988 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 256 | 274 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1082 | 1099 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1021 | 1126 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 252 | 274 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G24560.1 | ubiquitin-specific protease 16. Encodes a ubiquitin-specific protease. There is no evidence for a phenotype in ubp16-1 mutants, however, double mutant analysis with ubp15 mutants reveals a role for UBP16 in plant development and cell proliferation. | 0 |
| RefSeq | XP_010675222.1 | ubiquitin carboxyl-terminal hydrolase 16 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9SB51 | Ubiquitin carboxyl-terminal hydrolase 16 OS=Arabidopsis thaliana OX=3702 GN=UBP16 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5B7AG99 | Putative ubiquitin carboxyl-terminal hydrolase 16 isoform X2 OS=Davidia involucrata OX=16924 GN=Din_025223 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology