Basic Information
Locus ID:
TC03G2960
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
zinc finger (C3HC4-type RING finger) family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 116453866 | 116455352 | + | TC03G2960 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.71 | 44,713.37 Da | 47.63 | 78.42 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 153 | 196 | 1.23737E-19 | - |
| Pfam | PF13639 | Ring finger domain | 153 | 196 | 4.7E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 146 | 205 | 1.57E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 129 | 202 | 1.2E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 154 | 195 | 8.1E-8 | IPR001841 |
| SMART | SM01197 | FANCL_C_2 | 150 | 203 | 0.009 | - |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 154 | 196 | 13.035139 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 206 | 225 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G72220.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_003634417.1 | PREDICTED: RING-H2 finger protein ATL54 [Vitis vinifera] | 0 |
| Q8LFY8 | RING-H2 finger protein ATL54 OS=Arabidopsis thaliana OX=3702 GN=ATL54 PE=2 SV=2 | 0 | |
| TrEMBL | A5BMY3 | RING-type E3 ubiquitin transferase OS=Vitis vinifera OX=29760 GN=VITISV_008030 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology