Basic Information
Locus ID:
TC03G2707
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Short Name:
NTMC2T4.1
Description:
Synaptotagmin-like mitochondrial-lipid-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 108651555 | 108665343 | + | TC03G2707 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.59 | 55,261.91 Da | 27.69 | 105.95 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 265 | 348 | 3.45482E-28 | - |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 68 | 248 | 1.5E-18 | IPR039010 |
| Pfam | PF00168 | C2 domain | 263 | 359 | 5.0E-24 | IPR000008 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 261 | 390 | 2.38E-29 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 258 | 416 | 7.0E-33 | IPR035892 |
| SMART | SM00239 | C2_3c | 264 | 361 | 3.8E-22 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 246 | 362 | 20.285955 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 66 | 249 | 23.420713 | IPR031468 |
| PRINTS | PR00360 | C2 domain signature | 280 | 292 | 6.2E-6 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 305 | 318 | 6.2E-6 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 327 | 335 | 6.2E-6 | IPR000008 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 477 | 497 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 477 | 504 | - | - |
| Coils | Coil | Coil | 390 | 417 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61050.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. | 0 |
| RefSeq | XP_038682727.1 | synaptotagmin-4-like [Tripterygium wilfordii] | 0 |
| Q9LEX1 | Calcium-dependent lipid-binding protein OS=Arabidopsis thaliana OX=3702 GN=CLB PE=1 SV=1 | 0 | |
| TrEMBL | A0A7J7CFP6 | Synaptotagmin-5-like OS=Tripterygium wilfordii OX=458696 GN=HS088_TW17G00512 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology