Basic Information
Locus ID:
TC03G2688
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
Fasciclin-like arabinogalactan protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 107917253 | 107918542 | - | TC03G2688 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.41 | 44,180.72 Da | 43.63 | 90.77 | 0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02469 | Fasciclin domain | 198 | 328 | 2.4E-20 | IPR000782 |
| SUPERFAMILY | SSF82153 | FAS1 domain | 182 | 329 | 2.49E-25 | IPR036378 |
| SUPERFAMILY | SSF82153 | FAS1 domain | 31 | 136 | 1.7E-16 | IPR036378 |
| Gene3D | G3DSA:2.30.180.10 | FAS1 domain | 174 | 329 | 6.3E-19 | IPR036378 |
| Gene3D | G3DSA:2.30.180.10 | FAS1 domain | 24 | 172 | 1.2E-10 | IPR036378 |
| SMART | SM00554 | fasc_3 | 224 | 329 | 6.9E-18 | IPR000782 |
| ProSiteProfiles | PS50213 | FAS1/BIgH3 domain profile. | 186 | 326 | 18.002838 | IPR000782 |
| ProSiteProfiles | PS50213 | FAS1/BIgH3 domain profile. | 25 | 172 | 10.565905 | IPR000782 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 336 | 401 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 336 | 380 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45470.1 | FASCICLIN-like arabinogalactan protein 8. | 0 |
| RefSeq | XP_050249867.1 | fasciclin-like arabinogalactan protein 10 [Quercus robur] | 0 |
| O22126 | Fasciclin-like arabinogalactan protein 8 OS=Arabidopsis thaliana OX=3702 GN=FLA8 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5B6ZGX4 | Putative fasciclin-like arabinogalactan protein 8 OS=Davidia involucrata OX=16924 GN=Din_013043 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology