halophFGD

Basic Information

Locus ID: TC03G2545

Species & Taxonomic ID: Tamarix chinensis & 189791

Genome Assembly: GCA_030549775.1

Description: SecA preprotein cross-linking domain

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr3	103923742	103964172	-	TC03G2545

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.55	119,966.53 Da	44.17	94.60	-0.23

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd17928	DEXDc_SecA	106	462	5.6951E-126	-
CDD	cd18803	SF2_C_secA	468	751	3.16773E-61	IPR044722
Pfam	PF01043	SecA preprotein cross-linking domain	302	406	3.6E-25	IPR011130
Pfam	PF07517	SecA DEAD-like domain	81	449	4.6E-117	IPR011115
Pfam	PF07516	SecA Wing and Scaffold domain	781	1056	1.4E-42	IPR011116
SUPERFAMILY	SSF81767	Pre-protein crosslinking domain of SecA	294	415	4.19E-35	IPR036670
SUPERFAMILY	SSF81886	Helical scaffold and wing domains of SecA	787	1056	1.83E-37	IPR036266
SUPERFAMILY	SSF52540	P-loop containing nucleoside triphosphate hydrolases	465	767	6.12E-42	IPR027417
SUPERFAMILY	SSF52540	P-loop containing nucleoside triphosphate hydrolases	68	463	2.88E-72	IPR027417
Gene3D	G3DSA:3.90.1440.10	-	296	416	1.5E-163	-
Gene3D	G3DSA:1.10.3060.10	Helical scaffold and wing domains of SecA	920	1059	5.7E-19	-
Gene3D	G3DSA:3.40.50.300	-	465	783	9.3E-75	IPR027417
Gene3D	G3DSA:3.40.50.300	-	86	463	1.5E-163	IPR027417
Gene3D	G3DSA:1.10.3060.10	Helical scaffold and wing domains of SecA	786	901	2.6E-13	-
SMART	SM00958	SecA_PP_bind_2	295	406	1.1E-36	IPR011130
SMART	SM00957	SecA_DEAD_2	71	450	4.3E-226	IPR011115
TIGRFAM	TIGR00963	secA: preprotein translocase, SecA subunit	92	876	2.9E-259	IPR000185
ProSiteProfiles	PS51192	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	153	316	15.186909	IPR014001
ProSiteProfiles	PS51196	SecA family profile.	67	783	129.970032	IPR014018
ProSitePatterns	PS01312	SecA family signature.	550	565	-	IPR020937
PRINTS	PR00906	SecA protein signature	461	474	2.7E-60	IPR000185
PRINTS	PR00906	SecA protein signature	387	409	2.7E-60	IPR000185
PRINTS	PR00906	SecA protein signature	424	441	2.7E-60	IPR000185
PRINTS	PR00906	SecA protein signature	165	179	2.7E-60	IPR000185
PRINTS	PR00906	SecA protein signature	127	151	2.7E-60	IPR000185
PRINTS	PR00906	SecA protein signature	234	254	2.7E-60	IPR000185
PRINTS	PR00906	SecA protein signature	181	191	2.7E-60	IPR000185
Hamap	MF_01382	Protein translocase subunit SecA [secA].	66	1059	17.560369	IPR000185
Coils	Coil	Coil	57	77	-	-

Gene Ontology

Biological Process:

GO:0006605 (protein targeting) GO:0006886 (intracellular protein transport) GO:0017038 (protein import)

Molecular Function:

GO:0005524 (ATP binding)

Cellular Component:

GO:0016020 (membrane)

KEGG Pathway

KO Term:

K03070 (preprotein translocase subunit SecA [EC:7.4.2.8])

Pathway:

ko02024 (Quorum sensing) map02024 (Quorum sensing) ko03060 (Protein export) map03060 (Protein export) ko03070 (Bacterial secretion system) map03070 (Bacterial secretion system)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G21650.2	Preprotein translocase SecA family protein. Encodes a component of the thylakoid-localized Sec system involved in the translocation of cytoplasmic proteins into plastid. Loss-of-function mutations result in arrest at the globular stage and embryo lethality.
RefSeq	XP_010664174.1	PREDICTED: protein translocase subunit SECA2, chloroplastic isoform X1 [Vitis vinifera]
Swiss-Prot	D8WUA4	Protein translocase subunit SECA2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SECA2 PE=1 SV=1
TrEMBL	F6H0I5	Protein translocase subunit SecA OS=Vitis vinifera OX=29760 GN=VIT_18s0001g01860 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	2	jg10458, jg9019
Aizoaceae	Mesembryanthemum crystallinum	2	gene_1077, gene_13408
Amaranthaceae	Atriplex hortensis	2	Ah024121, Ah031607
Amaranthaceae	Beta vulgaris	2	BVRB_1g010050, BVRB_5g122730
Amaranthaceae	Salicornia bigelovii	5	Sbi_jg2775, Sbi_jg28369, Sbi_jg31191, Sbi_jg58082 ... Sbi_jg58084
Amaranthaceae	Salicornia europaea	2	Seu_jg25704, Seu_jg7111
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00004576, GOSA_00020180
Amaranthaceae	Suaeda glauca	4	Sgl11665, Sgl17164, Sgl54639, Sgl59975
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000011856, gene:ENSEOMG00000013510 ... gene:ENSEOMG00000031530, gene:ENSEOMG00000034341, gene:ENSEOMG00000044225, gene:ENSEOMG00000046942
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.1AG0012840, CQ.Regalona.r1.1BG0013100 ... CQ.Regalona.r1.8AG0010550, CQ.Regalona.r1.8BG0011700
Anacardiaceae	Pistacia vera	2	pistato.v30007280, pistato.v30039110
Apiaceae	Apium graveolens	3	Ag11G03939, Ag6G02443, Ag9G02368
Arecaceae	Cocos nucifera	2	COCNU_01G000270, COCNU_15G003170
Arecaceae	Phoenix dactylifera	2	gene-LOC103701417, gene-LOC103720122
Asparagaceae	Asparagus officinalis	2	AsparagusV1_02.2259.V1.1, AsparagusV1_07.3638.V1.1
Asteraceae	Flaveria trinervia	2	Ftri10G32559, Ftri18G11286
Brassicaceae	Arabidopsis thaliana	2	AT1G21650.3, AT4G01800.2
Brassicaceae	Eutrema salsugineum	2	Thhalv10006535m.g.v1.0, Thhalv10028392m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp1g19170.v2.2, Sp6g01650.v2.2
Brassicaceae	Brassica nigra	2	BniB03g009290.2N, BniB08g040660.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq03G1867, Ceq06G0547
Casuarinaceae	Casuarina glauca	2	Cgl03G2007, Cgl06G0567
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno05g06910, gene.Cymno08g07140
Dunaliellaceae	Dunaliella salina	2	Dusal.0027s00037.v1.0, Dusal.0035s00032.v1.0
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate01g16040, gene.Thate05g12950
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG04.547, evm.TU.LG06.839
Plantaginaceae	Plantago ovata	2	Pov_00016539, Pov_00021694
Plumbaginaceae	Limonium bicolor	2	Lb4G22942, Lb6G30841
Poaceae	Echinochloa crus-galli	5	AH02.1497, BH02.1573, BH04.644, CH02.1719, CH04.655
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_1AG0015110, gene-QOZ80_1BG0063980 ... gene-QOZ80_9AG0670100, gene-QOZ80_9BG0693570
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.3HG0259100.1, HORVU.MOREX.r3.4HG0347020.1
Poaceae	Lolium multiflorum	3	gene-QYE76_052738, gene-QYE76_059523, gene-QYE76_064524
Poaceae	Oryza coarctata	3	Oco01G009280, Oco02G009570, Oco22G003520
Poaceae	Oryza sativa	2	LOC_Os01g21820.1, LOC_Os11g08980.1
Poaceae	Paspalum vaginatum	2	gene-BS78_03G139800, gene-BS78_05G097000
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0103927, Pt_Chr0603665
Poaceae	Sporobolus alterniflorus	6	Chr02G022280, Chr05G013160, Chr05G013200, Chr05G013210 ... Chr16G010730, Chr17G009810
Poaceae	Thinopyrum elongatum	2	Tel3E01G338700, Tel4E01G158600
Poaceae	Triticum dicoccoides	4	gene_TRIDC3AG028190, gene_TRIDC3BG032070 ... gene_TRIDC4AG034290, gene_TRIDC4BG015530
Poaceae	Triticum aestivum	6	TraesCS3A02G198400.1, TraesCS3B02G222700.1 ... TraesCS3D02G196700.2, TraesCS4A02G216200.1, TraesCS4B02G100000.1, TraesCS4D02G096200.1
Poaceae	Zea mays	2	Zm00001eb090990_P001, Zm00001eb130760_P002
Poaceae	Zoysia japonica	2	nbis-gene-27238, nbis-gene-6517
Poaceae	Zoysia macrostachya	2	Zma_g10242, Zma_g18533
Portulacaceae	Portulaca oleracea	3	evm.TU.LG04.1549, evm.TU.LG10.1366, evm.TU.LG11.1721
Posidoniaceae	Posidonia oceanica	2	gene.Posoc01g13940, gene.Posoc05g18660
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_5_RagTag.729, evm.TU.Scaffold_7_RagTag.1138
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-10616, nbisL1-mrna-18708
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-103, nbisL1-mrna-5559
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-11369, nbisL1-mrna-13125
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000002l.412, evm.TU.utg000006l.609
Rhizophoraceae	Kandelia obovata	2	Maker00011737, Maker00013085
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-10163, nbisL1-mrna-8110
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-7364, nbisL1-mrna-9803
Salicaceae	Populus euphratica	2	populus_peu27429, populus_peu32459
Solanaceae	Lycium barbarum	2	gene-LOC132627149, gene-LOC132644885
Solanaceae	Solanum chilense	2	SOLCI001197400, SOLCI003112400
Solanaceae	Solanum pennellii	2	gene-LOC107002391, gene-LOC107004481
Tamaricaceae	Reaumuria soongarica	2	gene_17557, gene_866
Tamaricaceae	Tamarix chinensis	2	TC03G2545, TC07G1717
Zosteraceae	Zostera marina	4	Zosma03g36860.v3.1, Zosma03g36910.v3.1, Zosma06g28380.v3.1 ... Zosma07g00120.v3.1