Basic Information
Locus ID:
TC03G2478
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 101949394 | 101958833 | - | TC03G2478 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.29 | 43,397.04 Da | 62.91 | 89.51 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16474 | RING-H2_RNF111_like | 335 | 379 | 7.19031E-20 | - |
| Pfam | PF13639 | Ring finger domain | 335 | 377 | 1.4E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 325 | 382 | 5.16E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 318 | 386 | 8.0E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 336 | 376 | 3.3E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 336 | 377 | 12.031935 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 20 | 44 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 44 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G11680.1 | Zinc finger, C3HC4 type (RING finger) family protein. | 0 |
| RefSeq | XP_047983653.1 | E3 ubiquitin-protein ligase At1g12760-like [Salvia hispanica] | 0 |
| Q93Z92 | E3 ubiquitin-protein ligase At4g11680 OS=Arabidopsis thaliana OX=3702 GN=At4g11680 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2R6QP61 | E3 ubiquitin-protein like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc16000 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology