Basic Information
Locus ID:
TC03G2364
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
Receptor homology region, transmembrane domain- and RING domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 98898566 | 98917242 | + | TC03G2364 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.27 | 54,479.31 Da | 70.88 | 76.48 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16486 | mRING-H2-C3H2C2D_ZSWM2 | 237 | 279 | 2.40782E-21 | - |
| CDD | cd02123 | PA_C_RZF_like | 32 | 156 | 3.42521E-39 | IPR044744 |
| Pfam | PF13639 | Ring finger domain | 236 | 279 | 1.0E-11 | IPR001841 |
| Pfam | PF02225 | PA domain | 73 | 151 | 5.2E-11 | IPR003137 |
| SUPERFAMILY | SSF52025 | PA domain | 91 | 161 | 7.19E-9 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 220 | 294 | 2.15E-18 | - |
| Gene3D | G3DSA:3.50.30.30 | - | 34 | 164 | 1.6E-27 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 198 | 285 | 4.3E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 237 | 278 | 1.9E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 237 | 279 | 12.208971 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G71980.1 | Protease-associated (PA) RING/U-box zinc finger family protein. | 0 |
| RefSeq | XP_025015662.2 | receptor homology region, transmembrane domain- and RING domain-containing protein 2 [Ricinus communis] | 0 |
| Q8VZ14 | Receptor homology region, transmembrane domain- and RING domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=RMR2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5B7AGK2 | Putative E3 ubiquitin-protein ligase OS=Davidia involucrata OX=16924 GN=Din_024559 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology