Basic Information
Locus ID:
TC03G2242
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 94717875 | 94723068 | - | TC03G2242 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.65 | 98,043.38 Da | 52.90 | 83.46 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 804 | 845 | 1.51144E-23 | - |
| CDD | cd01989 | STK_N | 42 | 193 | 4.54814E-49 | - |
| Pfam | PF04564 | U-box domain | 800 | 872 | 5.2E-20 | IPR003613 |
| Pfam | PF00069 | Protein kinase domain | 520 | 768 | 2.3E-40 | IPR000719 |
| SUPERFAMILY | SSF57850 | RING/U-box | 794 | 871 | 2.47E-25 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 495 | 770 | 2.43E-66 | IPR011009 |
| SUPERFAMILY | SSF52402 | Adenine nucleotide alpha hydrolases-like | 58 | 171 | 1.09E-5 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 494 | 587 | 2.8E-24 | - |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 41 | 190 | 2.4E-5 | IPR014729 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 588 | 782 | 9.2E-47 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 798 | 872 | 3.6E-29 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 803 | 866 | 1.5E-28 | IPR003613 |
| SMART | SM00220 | serkin_6 | 515 | 781 | 1.4E-33 | IPR000719 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 799 | 873 | 39.542046 | IPR003613 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 515 | 782 | 34.46365 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 521 | 542 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 634 | 646 | - | IPR008271 |
| Coils | Coil | Coil | 382 | 416 | - | - |
| Coils | Coil | Coil | 333 | 364 | - | - |
| Coils | Coil | Coil | 431 | 486 | - | - |
| Coils | Coil | Coil | 856 | 873 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45910.1 | U-box domain-containing protein kinase family protein. | 0 |
| RefSeq | XP_010670307.2 | U-box domain-containing protein 33 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q8GUH1 | U-box domain-containing protein 33 OS=Arabidopsis thaliana OX=3702 GN=PUB33 PE=2 SV=2 | 0 | |
| TrEMBL | A0A2R6RA12 | Serine/threonine-protein kinase OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc09116 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology