Basic Information
Locus ID:
TC03G2230
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Short Name:
UBC4
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 94403818 | 94406027 | + | TC03G2230 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.35 | 25,357.14 Da | 40.68 | 72.36 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 85 | 185 | 1.72967E-41 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 82 | 184 | 7.7E-33 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 81 | 190 | 2.48E-39 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 69 | 203 | 5.1E-42 | IPR016135 |
| SMART | SM00212 | ubc_7 | 54 | 190 | 1.6E-36 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 17 | 190 | 34.34716 | IPR000608 |
| ProSitePatterns | PS00183 | Ubiquitin-conjugating (UBC) active site signature. | 115 | 131 | - | IPR023313 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 195 | 225 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 203 | 225 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G63800.2 | - | 0 |
| RefSeq | XP_042491333.1 | ubiquitin-conjugating enzyme E2-23 kDa-like isoform X2 [Macadamia integrifolia] | 0 |
| P42749 | Ubiquitin-conjugating enzyme E2 5 OS=Arabidopsis thaliana OX=3702 GN=UBC5 PE=2 SV=2 | 0 | |
| TrEMBL | B9RDU4 | Ubiquitin-conjugating enzyme h, putative OS=Ricinus communis OX=3988 GN=RCOM_1615890 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology