Basic Information
Locus ID:
TC03G1953
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 84609602 | 84611812 | - | TC03G1953 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.94 | 41,460.61 Da | 60.06 | 86.91 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 327 | 370 | 8.37629E-15 | - |
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 30 | 96 | 1.5E-14 | IPR025287 |
| Pfam | PF13639 | Ring finger domain | 327 | 370 | 1.4E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 321 | 372 | 5.46E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 288 | 375 | 4.8E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 328 | 369 | 2.9E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 328 | 370 | 12.371254 | IPR001841 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G25410.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021846500.1 | putative RING-H2 finger protein ATL21A [Spinacia oleracea] | 0 |
| Q9SKK8 | RING-H2 finger protein ATL22 OS=Arabidopsis thaliana OX=3702 GN=ATL22 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0K9QGR3 | RING-type domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_187580 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology