Basic Information
Locus ID:
TC03G1905
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 82658897 | 82663880 | + | TC03G1905 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.69 | 93,407.82 Da | 56.83 | 68.70 | -0.85 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16647 | mRING-HC-C3HC5_NEU1 | 778 | 817 | 3.85791E-18 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 776 | 822 | 7.0E-10 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 777 | 823 | 1.28E-7 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 754 | 828 | 3.4E-12 | IPR013083 |
| ProSiteProfiles | PS50007 | Phosphatidylinositol-specific phospholipase X-box domain profile. | 70 | 121 | 8.522799 | - |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 778 | 817 | 10.055033 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 108 | 139 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 642 | 670 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 16 | 40 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 108 | 128 | - | - |
| Coils | Coil | Coil | 706 | 733 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G04460.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021732900.1 | uncharacterized protein LOC110699684 [Chenopodium quinoa] | 0 |
| A8MQ27 | E3 ubiquitin-protein ligase NEURL1B OS=Homo sapiens OX=9606 GN=NEURL1B PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C9AXV2 | RING-type domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology