Basic Information
Locus ID:
TC03G1689
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 73738028 | 73739356 | - | TC03G1689 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.74 | 48,739.48 Da | 45.46 | 106.77 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 15 | 59 | 2.46476E-21 | - |
| Pfam | PF04564 | U-box domain | 11 | 90 | 1.1E-16 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 6 | 95 | 9.08E-26 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 112 | 377 | 1.48E-12 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 110 | 374 | 6.4E-11 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 98 | 1.4E-27 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 14 | 88 | 1.7E-25 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 10 | 95 | 33.641964 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G52450.1 | plant U-box 22. Encodes a cytoplasmically localized U-box domain E3 ubiquitin ligase protein that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity. | 0 |
| RefSeq | XP_023897427.1 | E3 ubiquitin-protein ligase PUB23-like isoform X1 [Quercus suber] | 0 |
| Q9SVC6 | E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis thaliana OX=3702 GN=PUB22 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5B7BYP4 | RING-type E3 ubiquitin transferase OS=Davidia involucrata OX=16924 GN=Din_043226 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology