Basic Information
Locus ID:
TC03G1685
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 73579362 | 73580591 | + | TC03G1685 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.96 | 46,058.37 Da | 41.73 | 101.03 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04564 | U-box domain | 6 | 78 | 3.5E-19 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 3 | 84 | 2.32E-28 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 100 | 377 | 1.39E-12 | IPR016024 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 85 | 8.7E-29 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 93 | 396 | 4.9E-12 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 9 | 74 | 6.0E-31 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 5 | 81 | 33.588886 | IPR003613 |
| Coils | Coil | Coil | 271 | 291 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G11840.1 | plant U-box 24. Encodes a U-box-domain-containing E3 ubiquitin ligase that acts as a negative regulator of PAMP-triggered immunity. | 0 |
| RefSeq | XP_010651653.1 | PREDICTED: E3 ubiquitin-protein ligase PUB24-like [Vitis vinifera] | 0 |
| Q9SF15 | E3 ubiquitin-protein ligase PUB24 OS=Arabidopsis thaliana OX=3702 GN=PUB24 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1W6GW30 | RING-type E3 ubiquitin transferase OS=Vitis vinifera OX=29760 GN=PUB24 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology