Basic Information
Locus ID:
TC03G1608
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
Belongs to the eukaryotic ribosomal protein eS6 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 70006448 | 70008604 | - | TC03G1608 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.60 | 28,432.82 Da | 40.22 | 74.92 | -0.85 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01092 | Ribosomal protein S6e | 2 | 126 | 4.2E-55 | IPR001377 |
| Gene3D | G3DSA:1.20.5.2650 | - | 131 | 232 | 2.2E-38 | - |
| SMART | SM01405 | Ribosomal_S6e_2 | 1 | 126 | 6.1E-79 | IPR001377 |
| PIRSF | PIRSF002129 | RPS6e | 1 | 248 | 2.0E-117 | IPR014401 |
| ProSitePatterns | PS00578 | Ribosomal protein S6e signature. | 50 | 61 | - | IPR018282 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 220 | 250 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 220 | 235 | - | - |
| Coils | Coil | Coil | 187 | 221 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
ko01521 (EGFR tyrosine kinase inhibitor resistance)
map01521 (EGFR tyrosine kinase inhibitor resistance)
ko03010 (Ribosome)
map03010 (Ribosome)
ko04066 (HIF-1 signaling pathway)
map04066 (HIF-1 signaling pathway)
ko04150 (mTOR signaling pathway)
map04150 (mTOR signaling pathway)
ko04151 (PI3K-Akt signaling pathway)
map04151 (PI3K-Akt signaling pathway)
ko04371 (Apelin signaling pathway)
map04371 (Apelin signaling pathway)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G31700.1 | ribosomal protein S6. Encodes a putative ribosomal protein S6 (rps6a). RPS6A and RPS6B are fully redundant and essential during gametogenesis. | 0 |
| RefSeq | XP_031396682.1 | 40S ribosomal protein S6-like [Punica granatum] | 0 |
| Q9M3V8 | Small ribosomal subunit protein eS6 OS=Asparagus officinalis OX=4686 GN=rps6 PE=2 SV=1 | 0 | |
| TrEMBL | A0A804I7B8 | 40S ribosomal protein S6 OS=Musa acuminata subsp. malaccensis OX=214687 GN=103977184 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology