Basic Information
Locus ID:
TC03G1387
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 57403026 | 57432236 | + | TC03G1387 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.20 | 64,505.70 Da | 48.01 | 96.26 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 261 | 553 | 2.97526E-47 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 259 | 295 | 2.9E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 345 | 383 | 0.014 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 305 | 341 | 0.0042 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 516 | 553 | 1.3E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 472 | 510 | 0.0014 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 254 | 553 | 4.19E-64 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 518 | 568 | 2.0E-10 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 251 | 517 | 2.2E-56 | IPR015943 |
| SMART | SM00320 | WD40_4 | 469 | 511 | 0.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 385 | 425 | 20.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 257 | 296 | 4.6E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 344 | 383 | 0.13 | IPR001680 |
| SMART | SM00320 | WD40_4 | 302 | 341 | 1.4E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 514 | 554 | 3.1E-11 | IPR001680 |
| SMART | SM00320 | WD40_4 | 427 | 465 | 68.0 | IPR001680 |
| SMART | SM00668 | ctlh | 95 | 151 | 3.4E-4 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 521 | 556 | 14.217871 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 62 | 94 | 8.286198 | IPR006594 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 95 | 151 | 9.649227 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 264 | 297 | 12.079106 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 521 | 556 | 11.761044 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 309 | 342 | 10.627413 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 309 | 350 | 13.282162 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 264 | 297 | 10.07378 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 370 | 384 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 283 | 297 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 283 | 297 | 2.5E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 370 | 384 | 2.5E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 541 | 555 | 2.5E-5 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08560.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_043688903.1 | WD repeat-containing protein 26 homolog [Telopea speciosissima] | 0 |
| Q9FNN2 | WD repeat-containing protein 26 homolog OS=Arabidopsis thaliana OX=3702 GN=WDR26 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5B6Z6X1 | Putative WD repeat-containing protein 26-like OS=Davidia involucrata OX=16924 GN=Din_008234 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology