Basic Information
Locus ID:
TC03G1361
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
Small ubiquitin-related modifier
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 56032492 | 56055634 | - | TC03G1361 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.36 | 12,318.74 Da | 55.42 | 61.74 | -0.79 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16116 | Ubl_Smt3_like | 20 | 92 | 2.22755E-48 | - |
| Pfam | PF11976 | Ubiquitin-2 like Rad60 SUMO-like | 21 | 91 | 2.7E-25 | IPR022617 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 7 | 96 | 1.9E-27 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 19 | 103 | 2.3E-39 | - |
| SMART | SM00213 | ubq_7 | 21 | 92 | 2.9E-15 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 19 | 96 | 16.624727 | IPR000626 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G26840.1 | small ubiquitin-like modifier 1. Encodes a small ubiquitin-like modifier (SUMO) polypeptide that becomes covalently attached to various intracellular protein targets, much like ubiquitination, leading to post-translational modification of those targets. | 0 |
| RefSeq | XP_042010888.1 | small ubiquitin-related modifier 2-like [Salvia splendens] | 0 |
| P55852 | Small ubiquitin-related modifier 1 OS=Arabidopsis thaliana OX=3702 GN=SUMO1 PE=1 SV=2 | 0 | |
| TrEMBL | M4EC90 | Small ubiquitin-related modifier OS=Brassica rapa subsp. pekinensis OX=51351 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology