Basic Information
Locus ID:
TC03G1138
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Short Name:
AFB3
Description:
transport inhibitor response
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 44759279 | 44763068 | - | TC03G1138 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.92 | 71,125.92 Da | 45.88 | 96.35 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18511 | F-box | 57 | 96 | 4.2E-17 | IPR041567 |
| Pfam | PF13516 | Leucine Rich repeat | 204 | 220 | 0.18 | IPR001611 |
| Pfam | PF18791 | Transport inhibitor response 1 protein domain | 116 | 162 | 1.9E-24 | IPR041101 |
| SUPERFAMILY | SSF52047 | RNI-like | 134 | 567 | 3.14E-33 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 52 | 95 | 5.1E-7 | IPR036047 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 96 | 638 | 1.3E-170 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 52 | 95 | 3.1E-17 | - |
| SMART | SM00367 | LRR_CC_2 | 179 | 204 | 95.0 | IPR006553 |
| SMART | SM00256 | fbox_2 | 59 | 100 | 1.7E-6 | IPR001810 |
| SMART | SM00367 | LRR_CC_2 | 421 | 445 | 17.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 364 | 387 | 500.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 154 | 178 | 4.4 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 530 | 555 | 71.0 | IPR006553 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G26810.1 | auxin signaling F-box 2. | 0 |
| RefSeq | XP_010682986.2 | protein AUXIN SIGNALING F-BOX 2 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9LW29 | Protein AUXIN SIGNALING F-BOX 2 OS=Arabidopsis thaliana OX=3702 GN=AFB2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A097F6G6 | Auxin signaling F-box protein 2 OS=Prunus salicina OX=88123 GN=AFB2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology