Basic Information
Locus ID:
TC03G0329
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Short Name:
SOS1
Description:
Sodium hydrogen exchanger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 10034621 | 10058620 | + | TC03G0329 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.37 | 128,462.82 Da | 37.92 | 103.17 | 0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00038 | CAP_ED | 740 | 849 | 6.97165E-6 | IPR000595 |
| Pfam | PF00999 | Sodium/hydrogen exchanger family | 34 | 447 | 1.2E-64 | IPR006153 |
| SUPERFAMILY | SSF51206 | cAMP-binding domain-like | 717 | 854 | 1.19E-13 | IPR018490 |
| Gene3D | G3DSA:6.10.140.1330 | - | 153 | 205 | 5.2E-20 | - |
| Gene3D | G3DSA:2.60.120.10 | Jelly Rolls | 727 | 858 | 5.7E-9 | IPR014710 |
| ProSiteProfiles | PS50042 | cAMP/cGMP binding motif profile. | 740 | 843 | 8.6238 | IPR000595 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1127 | 1150 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1090 | 1105 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1070 | 1162 | - | - |
Gene Ontology
Biological Process:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G01980.1 | sodium proton exchanger, putative (NHX7) (SOS1). Encodes a plasma membrane-localized Na+/H+ antiporter SOS1. Functions in the extrusion of toxic Na+ from cells and is essential for plant salt tolerance. Has 12 predicted transmembrane domains in the N-terminal region and a long cytoplasmic tail of approx. 700 aa at the C-terminal side. SOS1 interacts through its predicted cytoplasmic tail with RCD1, a regulator of oxidative-stress responses, suggesting that SOS1 might function in oxidative-stress tolerance. | 0 |
| RefSeq | XP_021843538.1 | sodium/hydrogen exchanger 8 [Spinacia oleracea] | 0 |
| Q9LKW9 | Sodium/hydrogen exchanger 7 OS=Arabidopsis thaliana OX=3702 GN=NHX7 PE=1 SV=1 | 0 | |
| TrEMBL | A0A067Y2L1 | SOS1 OS=Reaumuria trigyna OX=1091135 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg5090 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_17785 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah026992 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g131830 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg13570, Sbi_jg52328 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg9529 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00017556, GOSA_00017557 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl33361, Sgl38714 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000001552, gene:ENSEOMG00000001584 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0021220, CQ.Regalona.r1.6BG0022370 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30219280 |
| Apiaceae | Apium graveolens | 2 | Ag1G02121, Ag1G02122 |
| Arecaceae | Cocos nucifera | 2 | scaffold013355G000010, scaffold013355G000020 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103713094 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.1264.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri13G31684, Ftri18G28004 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G14660.1, AT2G01980.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10003547m.g.v1.0, Thhalv10006906m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 4 | Sp1g13020.v2.2, Sp1g13030.v2.2, Sp1g13040.v2.2 ... |
| Brassicaceae | Brassica nigra | 4 | BniB04g014590.2N, BniB06g039940.2N, BniB06g039950.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G0803 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G0900 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno11g10600, gene.Cymno11g10610 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0478s00004.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g21330 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.1122 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00015291, Pov_00015294 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb1G06040, Lb8G36155, Lb8G36162 |
| Poaceae | Echinochloa crus-galli | 3 | AH05.4245, BH05.4343, CH05.4572 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_5AG0399900, gene-QOZ80_5BG0448600 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0221490.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_036433 |
| Poaceae | Oryza coarctata | 3 | Oco23G011520, Oco24G011350, Oco24G011360 |
| Poaceae | Oryza sativa | 1 | LOC_Os12g44360.2 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_08G173000 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0401395, Pt_Chr0401412 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr06G021150, Chr10G001430, Chr11G017360 |
| Poaceae | Thinopyrum elongatum | 5 | Tel1E01G074400, Tel2E01G274300, Tel3E01G040100 ... |
| Poaceae | Triticum dicoccoides | 6 | gene_TRIDC1BG004810, gene_TRIDC2AG003640 ... |
| Poaceae | Triticum aestivum | 10 | TraesCS2A02G034700.1, TraesCS2A02G133600.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb033240_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-29005, nbis-gene-47397 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g26221, Zma_g29555 |
| Portulacaceae | Portulaca oleracea | 6 | evm.TU.LG02.239, evm.TU.LG03.2360, evm.TU.LG09.1479 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc08g05190 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_15_RagTag.290, evm.TU.Scaffold_17_RagTag.714 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-23405, nbisL1-mrna-23407 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-12407, nbisL1-mrna-5700 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-17601, nbisL1-mrna-20029 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000001l.183, evm.TU.utg000013l.384 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00004488, Maker00004609 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-10777, nbisL1-mrna-11537 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-14332, nbisL1-mrna-2660 |
| Salicaceae | Populus euphratica | 3 | populus_peu07267, populus_peu07268, populus_peu21264 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132616060, gene-LOC132625830 |
| Solanaceae | Solanum chilense | 1 | SOLCI005035900 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107005114 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_196 |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G0329 |
| Zosteraceae | Zostera marina | 1 | Zosma01g02820.v3.1 |