Basic Information
Locus ID:
TC03G0109
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP- glucose from Glc-1-P and ATP
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 3286404 | 3289543 | - | TC03G0109 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.90 | 23,701.98 Da | 36.30 | 88.88 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF51161 | Trimeric LpxA-like enzymes | 40 | 148 | 7.28E-10 | IPR011004 |
| Gene3D | G3DSA:2.160.10.10 | Hexapeptide repeat proteins | 43 | 153 | 1.5E-24 | - |
KEGG Pathway
Pathway:
ko00500 (Starch and sucrose metabolism)
map00500 (Starch and sucrose metabolism)
ko00520 (Amino sugar and nucleotide sugar metabolism)
map00520 (Amino sugar and nucleotide sugar metabolism)
ko01100 (Metabolic pathways)
map01100 (Metabolic pathways)
ko01110 (Biosynthesis of secondary metabolites)
map01110 (Biosynthesis of secondary metabolites)
ko02026 (Biofilm formation - Escherichia coli)
map02026 (Biofilm formation - Escherichia coli)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G48300.1 | ADP glucose pyrophosphorylase 1. Encodes the small subunit of ADP-glucose pyrophosphorylase. The small subunit is the catalytic isoform responsible for ADP-glucose pyrophosphorylase activity. The presence of the small subunit is required for large subunit stability. Two isoforms of the small subunit (ApS1 and ApS2) have been described. ApS1 is the major small subunit isoform present in all plant tissues tested. | 0 |
| RefSeq | XP_022856891.1 | glucose-1-phosphate adenylyltransferase small subunit 1, chloroplastic [Olea europaea var. sylvestris] | 0 |
| P52417 | Glucose-1-phosphate adenylyltransferase small subunit 2, chloroplastic OS=Vicia faba OX=3906 GN=AGPP PE=2 SV=1 | 0 | |
| TrEMBL | A0A6A4QMM5 | Glucose-1-phosphate adenylyltransferase small subunit 2 OS=Lupinus albus OX=3870 GN=Lalb_Chr04g0247561 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Hydrocharitaceae | Thalassia testudinum | 3 | gene.Thate01g20210, gene.Thate06g04540, gene.Thate06g20380 |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G0109 |