Basic Information
Locus ID:
TC02G3783
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Short Name:
CMT1
Description:
DNA (cytosine-5)-methyltransferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 129792756 | 129800584 | + | TC02G3783 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.04 | 44,186.74 Da | 51.47 | 64.49 | -0.65 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 217 | 365 | 1.23E-9 | IPR029063 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 290 | 384 | 2.7E-11 | - |
| Gene3D | G3DSA:2.30.30.490 | - | 112 | 254 | 5.7E-29 | IPR043151 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 76 | 103 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 52 | 154 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 104 | 118 | - | - |
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80740.1 | chromomethylase 1. ecotype Kl-0 chromomethylase (CMT1). A plant line expressing an RNAi construct directed against DMT4 has reduced agrobacterium-mediated tumor formation. | 0 |
| RefSeq | XP_042955968.1 | DNA (cytosine-5)-methyltransferase CMT3 [Carya illinoinensis] | 0 |
| A0A0P0VUY4 | DNA (cytosine-5)-methyltransferase CMT1 OS=Oryza sativa subsp. japonica OX=39947 GN=CMT1 PE=3 SV=1 | 0 | |
| TrEMBL | A0A2P5W6W9 | Cytosine-specific methyltransferase OS=Gossypium barbadense OX=3634 GN=GOBAR_AA33825 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000041905 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno09g09490 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00000426 |
| Posidoniaceae | Posidonia oceanica | 15 | gene.Posoc01g27490, gene.Posoc02g07800, gene.Posoc03g08260 ... |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G3783 |