Basic Information
Locus ID:
TC02G3469
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 120021525 | 120025209 | + | TC02G3469 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.69 | 30,512.71 Da | 34.29 | 65.32 | -0.61 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02309 | AUX/IAA family | 21 | 277 | 6.2E-83 | IPR033389 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 163 | 267 | 6.87E-19 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 162 | 280 | 7.4E-40 | - |
| ProSiteProfiles | PS51745 | PB1 domain profile. | 167 | 268 | 21.553804 | IPR000270 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 131 | 161 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 80 | 161 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G04730.1 | indoleacetic acid-induced protein 16. early auxin-induced (IAA16) | 0 |
| RefSeq | XP_011032399.1 | PREDICTED: auxin-responsive protein IAA16-like [Populus euphratica] | 0 |
| O24407 | Auxin-responsive protein IAA16 OS=Arabidopsis thaliana OX=3702 GN=IAA16 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6M2EDH6 | Auxin-responsive protein OS=Populus davidiana OX=266767 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology