Basic Information
Locus ID:
TC02G2853
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
BEST Arabidopsis thaliana protein match is Kinase-related
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 102250183 | 102262182 | + | TC02G2853 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.53 | 96,588.66 Da | 61.66 | 49.68 | -0.75 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF06972 | Protein of unknown function (DUF1296) | 81 | 139 | 1.7E-32 | IPR009719 |
| SUPERFAMILY | SSF46934 | UBA-like | 77 | 141 | 2.55E-15 | IPR009060 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 126 | 144 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 54 | 74 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 871 | 907 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 836 | 856 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 317 | 350 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 7 | 33 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 74 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 124 | 181 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 579 | 600 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G29370.1 | Kinase-related protein of unknown function (DUF1296). | 0 |
| RefSeq | XP_021764138.1 | uncharacterized protein LOC110728798 [Chenopodium quinoa] | 0 |
| Q8VZS6 | GBF-interacting protein 1 OS=Arabidopsis thaliana OX=3702 GN=GIP1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J4ZB91 | GIP1_N domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_018229 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg20712, jg22220, jg24994, jg38737 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_22445 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah016636 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg40507, Sbi_jg50543 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg2105 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00018035 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl45294, Sgl50077 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000010414, gene:ENSEOMG00000033701 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0008580, CQ.Regalona.r1.8BG0009340 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30070560 |
| Apiaceae | Apium graveolens | 3 | Ag7G00877, Ag8G00805, AgUnG00194 |
| Arecaceae | Cocos nucifera | 1 | COCNU_14G004340 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103712704, gene-LOC103714980 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.3147.V1.1, AsparagusV1_01.3598.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri15G20590, Ftri18G18679, Ftri5G13444 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT1G29350.1, AT1G29370.1, AT4G18150.1 |
| Brassicaceae | Eutrema salsugineum | 6 | Thhalv10006794m.g.v1.0, Thhalv10016218m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 5 | Sp1g25300.v2.2, Sp1g25310.v2.2, Sp7g15970.v2.2 ... |
| Brassicaceae | Brassica nigra | 11 | BniB01g010000.2N, BniB03g016620.2N, BniB03g033730.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G0394 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G0494 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno09g09800, gene.Cymno11g00400 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g14420 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-10752, nbisL1-mrna-4714 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG12.698 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00013226, Pov_00038421 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G14557 |
| Poaceae | Echinochloa crus-galli | 9 | AH02.2650, AH05.1247, AH05.1373, BH02.2726, BH05.1430 ... |
| Poaceae | Eleusine coracana subsp. coracana | 6 | gene-QOZ80_1AG0027630, gene-QOZ80_1BG0077810 ... |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.1HG0089390.1, HORVU.MOREX.r3.1HG0092090.2 ... |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_015218, gene-QYE76_015346, gene-QYE76_054416 |
| Poaceae | Oryza coarctata | 6 | Oco01G016540, Oco02G016690, Oco09G016960, Oco09G017780 ... |
| Poaceae | Oryza sativa | 3 | LOC_Os01g47430.1, LOC_Os05g49180.1, LOC_Os05g50480.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_03G221700, gene-BS78_09G238300 ... |
| Poaceae | Puccinellia tenuiflora | 5 | Pt_Chr0505682, Pt_Chr0506019, Pt_Chr0506042, Pt_Chr0605032 ... |
| Poaceae | Sporobolus alterniflorus | 12 | Chr01G015720, Chr01G016140, Chr02G013540, Chr03G012030 ... |
| Poaceae | Thinopyrum elongatum | 3 | Tel1E01G668400, Tel1E01G697000, Tel3E01G403900 |
| Poaceae | Triticum dicoccoides | 7 | gene_TRIDC1AG059530, gene_TRIDC1AG061840 ... |
| Poaceae | Triticum aestivum | 7 | TraesCS1A02G403900.1, TraesCS1A02G420300.1 ... |
| Poaceae | Zea mays | 11 | Zm00001eb093020_P001, Zm00001eb157580_P001 ... |
| Poaceae | Zoysia japonica | 5 | nbis-gene-13637, nbis-gene-24748, nbis-gene-24836 ... |
| Poaceae | Zoysia macrostachya | 6 | Zma_g10818, Zma_g27396, Zma_g27444, Zma_g28815, Zma_g28882 ... |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG18.1025, evm.TU.LG18.229, evm.TU.LG20.851 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g00990 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_14_RagTag.861, evm.TU.Scaffold_16_RagTag.778 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-16626, nbisL1-mrna-24954 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-5481, nbisL1-mrna-6445 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-17184, nbisL1-mrna-19170 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000022l.99, evm.TU.utg000025l.72 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00012341, Maker00016191 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-15917, nbisL1-mrna-99 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-10347, nbisL1-mrna-11067 |
| Salicaceae | Populus euphratica | 5 | populus_peu00976, populus_peu00977, populus_peu14971 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132617133, gene-LOC132623353 |
| Solanaceae | Solanum chilense | 2 | SOLCI002057000, SOLCI004488900 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107011002, gene-LOC107014456 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.27883_chr04_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G2853 |
| Zosteraceae | Zostera marina | 1 | Zosma01g03440.v3.1 |