Basic Information
Locus ID:
TC02G2604
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
TPL-binding domain in jasmonate signalling
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 94819463 | 94833831 | + | TC02G2604 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.14 | 96,339.22 Da | 46.47 | 75.33 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF16135 | Tify domain binding domain | 253 | 308 | 5.8E-10 | IPR032308 |
| Pfam | PF16135 | Tify domain binding domain | 445 | 496 | 1.7E-12 | IPR032308 |
| Pfam | PF00628 | PHD-finger | 511 | 563 | 4.3E-7 | IPR019787 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 507 | 565 | 1.75E-10 | IPR011011 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 750 | 838 | 4.72E-7 | IPR016181 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 592 | 650 | 5.96E-7 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 505 | 582 | 1.4E-12 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 591 | 654 | 4.7E-9 | IPR013083 |
| SMART | SM00249 | PHD_3 | 595 | 652 | 0.02 | IPR001965 |
| SMART | SM00249 | PHD_3 | 511 | 562 | 3.5E-10 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 509 | 564 | 9.721399 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 512 | 561 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 100 | 137 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G37520.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain. | 0 |
| RefSeq | XP_034693825.1 | uncharacterized protein LOC117920421 isoform X2 [Vitis riparia] | 0 |
| F4IXE7 | Increased DNA methylation 1 OS=Arabidopsis thaliana OX=3702 GN=IDM1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C9B102 | PHD-type domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology