Basic Information
Locus ID:
TC02G1974
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
TPL-binding domain in jasmonate signalling
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 77129394 | 77150189 | - | TC02G1974 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.13 | 109,083.41 Da | 40.66 | 75.76 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15568 | PHD5_NSD | 634 | 670 | 1.25441E-14 | - |
| Pfam | PF16135 | Tify domain binding domain | 569 | 617 | 2.3E-15 | IPR032308 |
| Pfam | PF16135 | Tify domain binding domain | 359 | 414 | 3.3E-11 | IPR032308 |
| Pfam | PF00628 | PHD-finger | 634 | 674 | 1.9E-7 | IPR019787 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 716 | 776 | 3.91E-8 | IPR011011 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 877 | 970 | 9.24E-6 | IPR016181 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 616 | 675 | 8.02E-16 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 620 | 698 | 1.7E-18 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 718 | 781 | 8.7E-12 | IPR013083 |
| SMART | SM00249 | PHD_3 | 725 | 778 | 9.1E-4 | IPR001965 |
| SMART | SM00249 | PHD_3 | 633 | 674 | 4.3E-9 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 631 | 676 | 10.0952 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 634 | 673 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 19 | 34 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 167 | 270 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 221 | 251 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 506 | 530 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 169 | 184 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 19 | 47 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G27980.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain. | 0 |
| RefSeq | XP_021774585.1 | uncharacterized protein LOC110738482 [Chenopodium quinoa] | 0 |
| Q14839 | Chromodomain-helicase-DNA-binding protein 4 OS=Homo sapiens OX=9606 GN=CHD4 PE=1 SV=2 | 0 | |
| TrEMBL | A0A368UJT0 | PHD-type domain-containing protein OS=Glycine max OX=3847 GN=GLYMA_19G187900 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology