Basic Information
Locus ID:
TC02G1945
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
RING finger and CHY zinc finger domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 76439181 | 76443811 | - | TC02G1945 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.10 | 37,965.14 Da | 57.83 | 56.53 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF05495 | CHY zinc finger | 28 | 109 | 2.3E-18 | IPR008913 |
| Pfam | PF13445 | RING-type zinc-finger | 164 | 204 | 1.5E-6 | IPR027370 |
| Pfam | PF14599 | Zinc-ribbon | 211 | 269 | 3.3E-26 | IPR039512 |
| SUPERFAMILY | SSF57850 | RING/U-box | 163 | 212 | 2.15E-9 | - |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 25 | 99 | 6.41E-16 | IPR037274 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 100 | 157 | 9.81E-19 | IPR037275 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 156 | 228 | 6.4E-10 | IPR013083 |
| Gene3D | G3DSA:2.20.28.10 | - | 235 | 277 | 2.0E-17 | - |
| SMART | SM00184 | ring_2 | 164 | 206 | 1.3E-6 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 21 | 97 | 25.114401 | IPR008913 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 99 | 163 | 34.247086 | IPR017921 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 164 | 207 | 11.751628 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22920.1 | CHY-type/CTCHY-type/RING-type Zinc finger protein. | 0 |
| RefSeq | XP_023911944.1 | E3 ubiquitin-protein ligase RZFP34-like [Quercus suber] | 0 |
| Q9FFB6 | E3 ubiquitin-protein ligase RZFP34 OS=Arabidopsis thaliana OX=3702 GN=RZPF34 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J4ZNP9 | RING-type domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_016535 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology