Basic Information
Locus ID:
TC02G1874
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 74507751 | 74522047 | - | TC02G1874 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.65 | 55,424.63 Da | 59.83 | 79.01 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 261 | 309 | 1.48459E-16 | - |
| Pfam | PF12906 | RING-variant domain | 261 | 308 | 9.0E-12 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 257 | 312 | 1.81E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 247 | 316 | 1.1E-16 | IPR013083 |
| SMART | SM00744 | ringv_2 | 260 | 309 | 1.5E-19 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 253 | 315 | 19.999691 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 160 | 179 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 467 | 506 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 223 | 249 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 180 | 194 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 75 | 105 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 15 | 34 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 105 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 160 | 200 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 467 | 486 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 228 | 242 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60580.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_010037957.2 | uncharacterized protein LOC104426553 [Eucalyptus grandis] | 0 |
| TrEMBL | A0A5B7BCR3 | RING-CH-type domain-containing protein OS=Davidia involucrata OX=16924 GN=Din_035449 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology