Basic Information
Locus ID:
TC02G1852
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Short Name:
UPL4
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 73939979 | 73954686 | + | TC02G1852 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.37 | 175,958.88 Da | 50.87 | 91.02 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00078 | HECTc | 1186 | 1536 | 4.61033E-101 | IPR000569 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 1233 | 1536 | 7.8E-65 | IPR000569 |
| SUPERFAMILY | SSF48371 | ARM repeat | 115 | 543 | 2.98E-31 | IPR016024 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 1181 | 1536 | 2.35E-79 | IPR035983 |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 1131 | 1331 | 2.5E-32 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 119 | 569 | 7.3E-44 | IPR011989 |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 1442 | 1547 | 1.0E-24 | - |
| SMART | SM00119 | hect_3 | 1195 | 1544 | 1.2E-74 | IPR000569 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 1225 | 1536 | 48.832996 | IPR000569 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 88 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 23 | 49 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 56 | 73 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G02880.2 | - | 0 |
| RefSeq | XP_021816645.1 | E3 ubiquitin-protein ligase UPL4 [Prunus avium] | 0 |
| Q9LYZ7 | E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis thaliana OX=3702 GN=UPL4 PE=3 SV=1 | 0 | |
| TrEMBL | A0A5B6YRA4 | HECT-type E3 ubiquitin transferase OS=Davidia involucrata OX=16924 GN=Din_003785 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology