Basic Information
Locus ID:
TC02G1830
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 72926483 | 72929039 | + | TC02G1830 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.09 | 24,700.34 Da | 54.45 | 82.30 | -0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 103 | 156 | 8.95886E-11 | - |
| Pfam | PF12906 | RING-variant domain | 103 | 155 | 1.1E-8 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 100 | 159 | 8.47E-10 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 91 | 165 | 1.8E-14 | IPR013083 |
| SMART | SM00744 | ringv_2 | 102 | 156 | 1.4E-17 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 95 | 162 | 17.412191 | IPR011016 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G05830.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_028212496.1 | uncharacterized protein LOC114395009 isoform X1 [Glycine soja] | 0 |
| TrEMBL | A0A0B2Q3N5 | RING-CH-type domain-containing protein OS=Glycine soja OX=3848 GN=D0Y65_048982 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology