Basic Information
Locus ID:
TC02G1795
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
Mitogen-activated protein kinase-binding protein 1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 72115624 | 72135142 | + | TC02G1795 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.29 | 131,593.59 Da | 47.94 | 84.86 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 108 | 146 | 8.3E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 156 | 188 | 0.02 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 548 | 582 | 0.087 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 73 | 718 | 8.06E-51 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 282 | 509 | 6.41E-20 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 444 | 592 | 5.7E-22 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 255 | 443 | 4.4E-10 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 593 | 786 | 1.5E-17 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 31 | 216 | 4.2E-34 | IPR015943 |
| SMART | SM00320 | WD40_4 | 635 | 676 | 11.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 105 | 146 | 4.8E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 448 | 486 | 3.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 319 | 358 | 63.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 489 | 541 | 0.36 | IPR001680 |
| SMART | SM00320 | WD40_4 | 59 | 102 | 42.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 545 | 584 | 7.0E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 589 | 632 | 6.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 152 | 189 | 0.61 | IPR001680 |
| SMART | SM00320 | WD40_4 | 374 | 420 | 27.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 678 | 717 | 9.5E-4 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 685 | 718 | 9.03805 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 552 | 587 | 8.637032 | IPR001680 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G09080.4 | - | 0 |
| RefSeq | XP_050243829.1 | uncharacterized protein LOC126692311 isoform X1 [Quercus robur] | 0 |
| Q8HXL3 | WD repeat-containing protein 62 OS=Sus scrofa OX=9823 GN=WDR62 PE=3 SV=1 | 0 | |
| TrEMBL | A0A834YZC5 | WD_REPEATS_REGION domain-containing protein OS=Tetracentron sinense OX=13715 GN=HHK36_016253 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg14799 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30285450 |
| Apiaceae | Apium graveolens | 1 | Ag5G02363 |
| Asteraceae | Flaveria trinervia | 1 | Ftri3G25194 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G09080.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10022253m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g07530.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB07g058390.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G1051 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl08G1076, Cgl08G1077 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.1010s00004.v1.0 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.1069 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00006461 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G09988 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_1_RagTag.1767 |
| Salicaceae | Populus euphratica | 1 | populus_peu11401 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132630690 |
| Solanaceae | Solanum chilense | 1 | SOLCI000172200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107029641 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_4371 |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G1795 |