Basic Information
Locus ID:
TC02G1733
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 70155056 | 70163424 | - | TC02G1733 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.12 | 118,842.63 Da | 47.08 | 67.16 | -0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 870 | 908 | 0.19 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 587 | 619 | 2.8E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 736 | 773 | 2.5E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 695 | 731 | 1.2E-6 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 585 | 910 | 1.12E-54 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 574 | 938 | 2.3E-59 | IPR015943 |
| SMART | SM00320 | WD40_4 | 821 | 866 | 18.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 776 | 814 | 2.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 581 | 620 | 2.0E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 867 | 908 | 0.18 | IPR001680 |
| SMART | SM00320 | WD40_4 | 734 | 773 | 5.9E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 693 | 731 | 2.7E-8 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 740 | 774 | 10.469233 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 740 | 774 | 12.580379 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 700 | 734 | 10.943775 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 588 | 621 | 11.497408 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 588 | 621 | 13.883689 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 700 | 740 | 14.318126 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 718 | 732 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 607 | 621 | 1.2E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 760 | 774 | 1.2E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 718 | 732 | 1.2E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 30 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 287 | 308 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 287 | 323 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 651 | 672 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 524 | 566 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 489 | 511 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 309 | 323 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 526 | 551 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 19 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15470.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_021726087.1 | uncharacterized protein LOC110693240 isoform X1 [Chenopodium quinoa] | 0 |
| Q498F0 | WD repeat-containing protein 44 OS=Xenopus laevis OX=8355 GN=wdr44 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7J7HCY2 | WD repeat-containing protein 44-like OS=Camellia sinensis OX=4442 GN=HYC85_011711 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology