Basic Information
Locus ID:
TC02G1650
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
SNF2 domain-containing protein helicase domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 67598766 | 67647871 | - | TC02G1650 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.31 | 117,300.08 Da | 50.57 | 81.58 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18008 | DEXDc_SHPRH-like | 334 | 676 | 2.83602E-78 | - |
| CDD | cd18793 | SF2_C_SNF | 937 | 1046 | 1.44252E-53 | - |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 791 | 827 | 5.8E-5 | IPR018957 |
| Pfam | PF00176 | SNF2 family N-terminal domain | 354 | 752 | 2.3E-64 | IPR000330 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 939 | 1037 | 1.3E-14 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 684 | 1060 | 6.59E-50 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 323 | 676 | 1.39E-43 | IPR027417 |
| SUPERFAMILY | SSF57850 | RING/U-box | 783 | 848 | 2.14E-10 | - |
| Gene3D | G3DSA:3.40.50.10810 | - | 310 | 395 | 7.0E-11 | IPR038718 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 760 | 856 | 9.7E-13 | IPR013083 |
| Gene3D | G3DSA:3.40.50.10810 | - | 437 | 550 | 7.8E-11 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 566 | 677 | 2.5E-28 | IPR038718 |
| Gene3D | G3DSA:3.40.50.300 | - | 878 | 1061 | 2.7E-50 | IPR027417 |
| SMART | SM00490 | helicmild6 | 954 | 1037 | 1.1E-16 | IPR001650 |
| SMART | SM00487 | ultradead3 | 330 | 646 | 1.3E-26 | IPR014001 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 791 | 830 | 11.250026 | IPR001841 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 460 | 638 | 10.427347 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 919 | 1061 | 13.357146 | IPR001650 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 806 | 815 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 171 | 221 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 180 | 221 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 425 | 455 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 524 | 544 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50410.1 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_028072872.1 | helicase-like transcription factor CHR28 isoform X1 [Camellia sinensis] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5B7BEX3 | Helicase-like transcription factor CHR28 OS=Davidia involucrata OX=16924 GN=Din_036227 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology