Basic Information
Locus ID:
TC02G1580
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 64912530 | 64944568 | - | TC02G1580 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.02 | 66,055.71 Da | 56.04 | 59.69 | -0.65 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16623 | RING-HC_RBR_TRIAD1_like | 132 | 182 | 5.17122E-16 | - |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 280 | 327 | 1.9E-9 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 201 | 263 | 3.6E-15 | IPR002867 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 555 | 582 | 1.41E-6 | IPR036443 |
| SUPERFAMILY | SSF57850 | RING/U-box | 128 | 213 | 1.7E-18 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 282 | 330 | 1.5E-16 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 202 | 270 | 5.39E-12 | - |
| Gene3D | G3DSA:1.20.120.1750 | - | 259 | 514 | 7.1E-85 | - |
| Gene3D | G3DSA:2.30.30.380 | - | 553 | 582 | 1.2E-5 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 126 | 212 | 6.2E-18 | IPR013083 |
| SMART | SM00647 | ibrneu5 | 276 | 337 | 0.061 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 201 | 263 | 4.5E-24 | IPR002867 |
| SMART | SM00547 | zf_4 | 557 | 581 | 0.006 | IPR001876 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 128 | 341 | 50.839432 | IPR044066 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 132 | 176 | 8.697757 | IPR001841 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 559 | 578 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 51 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 41 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 522 | 549 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G65430.1 | IBR domain-containing protein. | 0 |
| RefSeq | XP_021734336.1 | probable E3 ubiquitin-protein ligase ARI8 isoform X1 [Chenopodium quinoa] | 0 |
| Q8W468 | Probable E3 ubiquitin-protein ligase ARI8 OS=Arabidopsis thaliana OX=3702 GN=ARI8 PE=2 SV=1 | 0 | |
| TrEMBL | F6I222 | RBR-type E3 ubiquitin transferase OS=Vitis vinifera OX=29760 GN=VIT_00s0207g00090 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology