Basic Information
Locus ID:
TC02G1357
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
WD repeat domain phosphoinositide-interacting protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 57971933 | 57974252 | + | TC02G1357 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.23 | 46,913.26 Da | 49.26 | 71.78 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 46 | 402 | 9.83E-32 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 33 | 401 | 9.5E-19 | IPR015943 |
| SMART | SM00320 | WD40_4 | 38 | 75 | 9.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 264 | 305 | 2.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 365 | 404 | 120.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 221 | 261 | 0.35 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 42 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 10 | 35 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 317 | 338 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 316 | 339 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62770.1 | Transducin/WD40 repeat-like superfamily protein. Required for autophagosome formation during nutrient deprivation and senescence. | 0 |
| RefSeq | XP_021608872.1 | autophagy-related protein 18a isoform X1 [Manihot esculenta] | 0 |
| Q93VB2 | Autophagy-related protein 18a OS=Arabidopsis thaliana OX=3702 GN=ATG18A PE=1 SV=1 | 0 | |
| TrEMBL | A0A1R3IGZ0 | Autophagy-related protein 18a-like OS=Corchorus olitorius OX=93759 GN=COLO4_23397 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology