Basic Information
Locus ID:
TC02G1057
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 46537504 | 46545013 | + | TC02G1057 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.64 | 97,127.65 Da | 65.38 | 62.47 | -1.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16647 | mRING-HC-C3HC5_NEU1 | 796 | 836 | 4.70221E-21 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 794 | 841 | 5.0E-11 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 796 | 842 | 3.09E-8 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 780 | 847 | 1.1E-12 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 797 | 836 | 10.733671 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 179 | 247 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 225 | 247 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 47 | 77 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 186 | 224 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 127 | 149 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 765 | 787 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 498 | 520 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 765 | 781 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 48 | 77 | - | - |
| Coils | Coil | Coil | 728 | 748 | - | - |
| Coils | Coil | Coil | 163 | 183 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G04460.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_028076701.1 | uncharacterized protein LOC114278766 isoform X2 [Camellia sinensis] | 0 |
| TrEMBL | A0A5J5AXC1 | RING-type domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_031993 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology