Basic Information
Locus ID:
TC02G1024
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 45592433 | 45602600 | + | TC02G1024 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.32 | 70,947.32 Da | 33.69 | 100.44 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 266 | 308 | 4.89701E-28 | - |
| Pfam | PF04564 | U-box domain | 262 | 332 | 6.7E-22 | IPR003613 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 389 | 428 | 1.6E-10 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 473 | 510 | 1.3E-5 | IPR000225 |
| SUPERFAMILY | SSF48371 | ARM repeat | 357 | 633 | 9.36E-51 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 257 | 336 | 1.29E-31 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 336 | 638 | 5.0E-56 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 262 | 335 | 2.7E-31 | IPR013083 |
| Gene3D | G3DSA:1.20.930.20 | - | 19 | 135 | 4.9E-6 | IPR036537 |
| SMART | SM00185 | arm_5 | 430 | 470 | 0.32 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 265 | 328 | 2.0E-36 | IPR003613 |
| SMART | SM00185 | arm_5 | 512 | 552 | 140.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 389 | 429 | 3.3E-6 | IPR000225 |
| SMART | SM00185 | arm_5 | 471 | 511 | 0.12 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 400 | 442 | 12.0574 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 261 | 335 | 44.61063 | IPR003613 |
| Coils | Coil | Coil | 141 | 161 | - | - |
| Coils | Coil | Coil | 619 | 639 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G54850.1 | plant U-box 14. Encodes a protein with a typical U-box domain followed by an Armadillo repeat region, a domain organization that is frequently found in plant U-box proteins. Displays ubiquitin ligase activity in vitro. | 0 |
| RefSeq | XP_021717676.1 | U-box domain-containing protein 14 [Chenopodium quinoa] | 0 |
| Q8VZ40 | U-box domain-containing protein 14 OS=Arabidopsis thaliana OX=3702 GN=PUB14 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C9ERV6 | RING-type E3 ubiquitin transferase OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology