Basic Information
Locus ID:
TC02G0882
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
Topless-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 40146405 | 40154095 | + | TC02G0882 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.51 | 124,474.55 Da | 40.67 | 84.43 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 450 | 484 | 0.0016 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 804 | 1084 | 1.58E-30 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 342 | 657 | 2.75E-39 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 723 | 913 | 4.3E-17 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 298 | 539 | 1.7E-29 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 561 | 675 | 2.3E-9 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 931 | 1094 | 3.0E-6 | IPR015943 |
| SMART | SM00668 | ctlh | 34 | 92 | 5.4E-14 | IPR006595 |
| SMART | SM00320 | WD40_4 | 397 | 437 | 150.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 486 | 527 | 0.014 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1046 | 1083 | 33.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 530 | 573 | 210.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 834 | 874 | 3.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 986 | 1028 | 34.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 795 | 831 | 340.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 877 | 919 | 2.7 | IPR001680 |
| SMART | SM00667 | Lish | 4 | 36 | 3.2E-4 | IPR006594 |
| SMART | SM00320 | WD40_4 | 338 | 377 | 0.0031 | IPR001680 |
| SMART | SM00320 | WD40_4 | 576 | 616 | 1.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 443 | 484 | 5.5E-4 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 594 | 625 | 9.305395 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 450 | 493 | 9.305395 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 13.522844 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 344 | 386 | 9.03805 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 9.818093 | IPR006594 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 471 | 485 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1101 | 1122 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1089 | 1122 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G27030.1 | TOPLESS-related 3. | 0 |
| RefSeq | XP_021772817.1 | topless-related protein 3-like [Chenopodium quinoa] | 0 |
| Q5NBT9 | Protein TPR1 OS=Oryza sativa subsp. japonica OX=39947 GN=TPR1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9RIJ6 | Topless-related protein 3-like OS=Spinacia oleracea OX=3562 GN=SOVF_060520 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology