Basic Information
Locus ID:
TC02G0736
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
Rhamnogalacturonate lyase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 33479803 | 33483446 | - | TC02G0736 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.01 | 73,100.03 Da | 31.00 | 71.08 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10316 | RGL4_M | 334 | 438 | 1.81324E-27 | IPR029413 |
| CDD | cd10320 | RGL4_N | 8 | 294 | 3.96681E-71 | - |
| CDD | cd10317 | RGL4_C | 451 | 637 | 2.59707E-58 | - |
| Pfam | PF14683 | Polysaccharide lyase family 4, domain III | 449 | 636 | 8.0E-56 | IPR029411 |
| Pfam | PF06045 | Rhamnogalacturonate lyase family | 6 | 203 | 4.3E-86 | IPR010325 |
| Pfam | PF14686 | Polysaccharide lyase family 4, domain II | 357 | 425 | 1.3E-21 | IPR029413 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 13 | 293 | 8.16E-6 | IPR011013 |
| SUPERFAMILY | SSF49785 | Galactose-binding domain-like | 446 | 637 | 3.74E-51 | IPR008979 |
| SUPERFAMILY | SSF49452 | Starch-binding domain-like | 377 | 420 | 5.89E-7 | IPR013784 |
| Gene3D | G3DSA:2.60.40.1120 | - | 334 | 431 | 8.5E-7 | - |
| Gene3D | G3DSA:2.60.120.260 | - | 447 | 637 | 5.7E-24 | - |
| Gene3D | G3DSA:2.70.98.10 | - | 5 | 293 | 3.6E-8 | IPR014718 |
| Coils | Coil | Coil | 552 | 572 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G09910.2 | - | 0 |
| RefSeq | XP_021852504.1 | probable rhamnogalacturonate lyase B isoform X1 [Spinacia oleracea] | 0 |
| TrEMBL | A0A0K9RZ62 | rhamnogalacturonan endolyase OS=Spinacia oleracea OX=3562 GN=SOVF_012950 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology