Basic Information
Locus ID:
TC02G0657
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 29510397 | 29512632 | - | TC02G0657 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.13 | 34,294.82 Da | 36.80 | 70.56 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03829 | Sina | 170 | 298 | 7.4427E-63 | - |
| CDD | cd16571 | RING-HC_SIAHs | 54 | 92 | 1.23597E-15 | - |
| Pfam | PF03145 | Seven in absentia protein family | 98 | 297 | 6.5E-78 | IPR018121 |
| SUPERFAMILY | SSF57850 | RING/U-box | 48 | 95 | 3.79E-6 | - |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 109 | 301 | 1.57E-45 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 19 | 107 | 4.3E-8 | IPR013083 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 165 | 297 | 7.3E-38 | IPR008974 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 108 | 164 | 4.2E-16 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 56 | 92 | 9.361642 | IPR001841 |
| ProSiteProfiles | PS51081 | Zinc finger SIAH-type profile. | 109 | 169 | 14.040457 | IPR013010 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61790.1 | Protein with RING/U-box and TRAF-like domains. | 0 |
| RefSeq | XP_052176689.1 | E3 ubiquitin-protein ligase DIS1 [Diospyros lotus] | 0 |
| Q10L91 | E3 ubiquitin-protein ligase DIS1 OS=Oryza sativa subsp. japonica OX=39947 GN=DIS1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7J0FVZ0 | RING-type E3 ubiquitin transferase OS=Actinidia rufa OX=165716 GN=Acr_15g0011960 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology