Basic Information
Locus ID:
TC02G0537
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
Synaptotagmin-like mitochondrial-lipid-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 23450183 | 23455341 | + | TC02G0537 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.16 | 63,779.39 Da | 31.32 | 103.64 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 443 | 539 | 2.80999E-26 | - |
| CDD | cd00030 | C2 | 264 | 366 | 5.01829E-26 | - |
| Pfam | PF00168 | C2 domain | 262 | 366 | 1.4E-21 | IPR000008 |
| Pfam | PF00168 | C2 domain | 441 | 542 | 2.6E-22 | IPR000008 |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 70 | 248 | 1.7E-16 | IPR039010 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 438 | 559 | 2.99E-30 | IPR035892 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 260 | 391 | 5.55E-29 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 424 | 559 | 2.2E-31 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 254 | 390 | 3.9E-31 | IPR035892 |
| SMART | SM00239 | C2_3c | 263 | 363 | 4.8E-21 | IPR000008 |
| SMART | SM00239 | C2_3c | 442 | 540 | 5.1E-21 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 424 | 541 | 20.044497 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 240 | 364 | 20.214937 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 67 | 249 | 31.036772 | IPR031468 |
| PRINTS | PR00360 | C2 domain signature | 506 | 514 | 5.6E-6 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 484 | 497 | 5.6E-6 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 458 | 470 | 5.6E-6 | IPR000008 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05500.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. Encodes a endomembrane-localized synaptotagmin. Synaptotagmin family proteins are calcium sensors that regulate exocytosis in mammalian cells. | 0 |
| RefSeq | XP_010696554.1 | synaptotagmin-5 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| A0JJX5 | Synaptotagmin-4 OS=Arabidopsis thaliana OX=3702 GN=SYT4 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7C9EDV8 | Synaptotagmin-5 OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology