HalophFGD

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Basic Information
Locus ID: TC02G0334
Species & Taxonomic ID: Tamarix chinensis & 189791
Genome Assembly: GCA_030549775.1
Description: Pentatricopeptide repeat-containing protein
Maps and Mapping Data
Chromosome Start End Strand ID
chr2 13967039 13972240 + TC02G0334
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
7.81 71,552.90 Da 33.48 81.23 -0.27
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
Pfam PF13041 PPR repeat family 426 472 1.1E-12 IPR002885
Pfam PF17177 Pentacotripeptide-repeat region of PRORP 303 420 5.7E-10 IPR033443
Pfam PF17177 Pentacotripeptide-repeat region of PRORP 161 294 6.3E-13 IPR033443
Pfam PF13812 Pentatricopeptide repeat domain 99 157 1.7E-6 IPR002885
SUPERFAMILY SSF81901 HCP-like 155 488 4.18E-7 -
Gene3D G3DSA:1.25.40.10 Tetratricopeptide repeat domain 77 233 5.7E-26 IPR011990
Gene3D G3DSA:1.25.40.10 Tetratricopeptide repeat domain 234 343 6.4E-29 IPR011990
Gene3D G3DSA:1.25.40.10 Tetratricopeptide repeat domain 344 556 6.8E-47 IPR011990
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 395 428 4.5E-7 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 254 288 5.8E-6 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 151 181 9.3E-5 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 220 253 7.9E-5 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 184 217 1.9E-5 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 290 322 1.8E-7 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 359 392 4.6E-6 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 429 462 2.8E-8 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 324 358 1.1E-4 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 357 391 11.136739 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 462 496 9.196589 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 392 426 11.070971 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 217 251 10.632519 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 427 461 12.298636 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 181 215 10.084454 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 287 321 12.068449 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 146 180 11.366925 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 322 356 9.415814 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 252 286 11.4875 IPR002885
MobiDBLite mobidb-lite consensus disorder prediction 514 534 - -
Gene Ontology
Molecular Function:
GO:0005515 (protein binding)
KEGG Pathway
KO Term:
K17710 (pentatricopeptide repeat domain-containing protein 1)
Best hit
Source Best Hit ID Description E-value
TAIR AT5G25630.1 Tetratricopeptide repeat (TPR)-like superfamily protein. 0
RefSeq XP_010667871.2 pentatricopeptide repeat-containing protein At5g25630 [Beta vulgaris subsp. vulgaris] 0
Swiss-Prot Q8GZ63 Pentatricopeptide repeat-containing protein At5g25630 OS=Arabidopsis thaliana OX=3702 GN=At5g25630 PE=2 SV=2 0
TrEMBL A0A0J8CWP3 Pentatricopeptide repeat-containing protein OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_2g031840 PE=4 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network

No network data available for this species.

Orthology
Family Species Count Orthologous Genes
Acanthaceae Avicennia marina 2 jg3824, jg7860
Aizoaceae Mesembryanthemum crystallinum 2 gene_10714, gene_8166
Amaranthaceae Atriplex hortensis 2 Ah014544, Ah034904
Amaranthaceae Beta vulgaris 4 BVRB_2g031840, BVRB_8g196490, BVRB_8g196500, BVRB_8g196530
Amaranthaceae Salicornia bigelovii 4 Sbi_jg21000, Sbi_jg22782, Sbi_jg24975, Sbi_jg8835
Amaranthaceae Salicornia europaea 2 Seu_jg16657, Seu_jg19774
Amaranthaceae Suaeda aralocaspica 1 GOSA_00007807
Amaranthaceae Suaeda glauca 5 Sgl42210, Sgl46980, Sgl54062, Sgl62458, Sgl67003
Amaranthaceae Chenopodium album 6 gene:ENSEOMG00000010687, gene:ENSEOMG00000018396 ...
gene:ENSEOMG00000019210, gene:ENSEOMG00000032878, gene:ENSEOMG00000047297, gene:ENSEOMG00000050856
Amaranthaceae Chenopodium quinoa 4 CQ.Regalona.r1.2AG0016360, CQ.Regalona.r1.2BG0018130 ...
CQ.Regalona.r1.8AG0020160, CQ.Regalona.r1.8BG0022280
Anacardiaceae Pistacia vera 2 pistato.v30253400, pistato.v30256590
Apiaceae Apium graveolens 2 Ag10G01538, Ag7G00293
Arecaceae Cocos nucifera 1 COCNU_03G012070
Arecaceae Phoenix dactylifera 1 gene-LOC103710907
Asparagaceae Asparagus officinalis 3 AsparagusV1_01.1546.V1.1, AsparagusV1_07.2392.V1.1 ...
AsparagusV1_07.417.V1.1
Asteraceae Flaveria trinervia 1 Ftri3G24253
Brassicaceae Arabidopsis thaliana 2 AT5G21222.1, AT5G25630.2
Brassicaceae Eutrema salsugineum 2 Thhalv10003915m.g.v1.0, Thhalv10012659m.g.v1.0
Brassicaceae Schrenkiella parvula 2 Sp2g21900.v2.2, Sp6g23340.v2.2
Brassicaceae Brassica nigra 3 BniB02g041700.2N, BniB07g025020.2N, BniB07g039680.2N
Casuarinaceae Casuarina equisetifolia 2 Ceq04G2119, Ceq06G1498
Casuarinaceae Casuarina glauca 3 Cgl04G2313, Cgl04G2324, Cgl06G1553
Cymodoceaceae Cymodocea nodosa 3 gene.Cymno02g12490, gene.Cymno02g13330, gene.Cymno12g02340
Hydrocharitaceae Thalassia testudinum 1 gene.Thate09g15860
Nitrariaceae Nitraria sibirica 2 evm.TU.LG07.1088, evm.TU.LG07.775
Plantaginaceae Plantago ovata 1 Pov_00003850
Plumbaginaceae Limonium bicolor 2 Lb7G34995, Lb7G35002
Poaceae Echinochloa crus-galli 3 AH06.2290, BH07.3959, CH06.2313
Poaceae Eleusine coracana subsp. coracana 2 gene-QOZ80_6AG0521710, gene-QOZ80_6BG0474830
Poaceae Hordeum vulgare 1 HORVU.MOREX.r3.3HG0248630.1
Poaceae Lolium multiflorum 2 gene-QYE76_051474, gene-QYE76_051482
Poaceae Oryza coarctata 2 Oco01G005680, Oco02G005770
Poaceae Paspalum vaginatum 1 gene-BS78_10G191200
Poaceae Puccinellia tenuiflora 2 Pt_Chr0204886, Pt_Chr0205057
Poaceae Sporobolus alterniflorus 3 Chr07G014820, Chr21G007420, Chr31G007880
Poaceae Thinopyrum elongatum 1 Tel3E01G276300
Poaceae Triticum dicoccoides 2 gene_TRIDC3AG020600, gene_TRIDC3BG030970
Poaceae Triticum aestivum 3 TraesCS3A02G153300.1, TraesCS3B02G179900.1 ...
TraesCS3D02G160600.2
Poaceae Zea mays 1 Zm00001eb315460_P002
Poaceae Zoysia macrostachya 1 Zma_g29714
Portulacaceae Portulaca oleracea 4 evm.TU.LG02.2875, evm.TU.LG05.2345, evm.TU.LG07.1110 ...
evm.TU.LG23.1077
Posidoniaceae Posidonia oceanica 2 gene.Posoc08g13310, gene.Posoc09g07670
Rhizophoraceae Bruguiera sexangula 3 evm.TU.60417.2, evm.TU.60418.2 ...
evm.TU.Scaffold_4_RagTag.1207
Rhizophoraceae Carallia pectinifolia 1 nbisL1-mrna-25631
Rhizophoraceae Ceriops tagal 1 nbisL1-mrna-14993
Rhizophoraceae Ceriops zippeliana 1 nbisL1-mrna-4712
Rhizophoraceae Kandelia candel 1 evm.TU.utg000008l.1113
Rhizophoraceae Kandelia obovata 1 Maker00001456
Rhizophoraceae Rhizophora apiculata 2 nbisL1-mrna-14184, nbisL1-mrna-9731
Rhizophoraceae Rhizophora mangle 2 nbisL1-mrna-21067, nbisL1-mrna-996
Salicaceae Populus euphratica 4 populus_peu04868, populus_peu12782, populus_peu21928 ...
populus_peu38110
Solanaceae Lycium barbarum 2 gene-LOC132603462, gene-LOC132635663
Solanaceae Solanum chilense 2 SOLCI000411300, SOLCI005497300
Solanaceae Solanum pennellii 2 gene-LOC107026118, gene-LOC107028521
Tamaricaceae Reaumuria soongarica 2 STRG.32841_chr09_-, STRG.3917_chr02_+
Tamaricaceae Tamarix chinensis 2 TC02G0334, TC12G1292
Zosteraceae Zostera marina 1 Zosma05g13580.v3.1
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.